Summary
- Splice variants
- Transcript comparison
- Gene alleles
Sequence
- Secondary Structure
Comparative Genomics
Ontologies
- GO: Anatomical entity
Phenotypes
Genetic Variation
Gene expression
Pathway
Molecular interactions
Regulation
External references
Supporting evidence
ID History
- Gene history

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Gene: SGMS1 ENSDARG00000057053

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Description

sphingomyelin synthase 1a [Source:ZFIN;Acc:ZDB-GENE-041114-201]

Location

Chromosome 17: 23,729,717-23,765,068 forward strand.

GRCz11:CM002901.2

About this gene

This gene has 3 transcripts (splice variants), 198 orthologues and 4 paralogues.

Transcripts

Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSDART00000135561.2	SGMS1-201	3856	419aa	ENSDARP00000122611.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	Q5U3Z9	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1,
ENSDART00000179026.2	SGMS1-202	4087	419aa	ENSDARP00000144395.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	Q5U3Z9	APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1,
ENSDART00000034913.6	SGMS1-203	3870	419aa	ENSDARP00000031713.4	Gene/transcipt that contains an open reading frame (ORF).Protein coding	Q5U3Z9	APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1,

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Summary

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