Summary
- Splice variants
- Transcript comparison
- Gene alleles
Sequence
- Secondary Structure
Comparative Genomics
Ontologies
- GO: Biological process
- GO: Molecular function
- GO: Cellular component
Phenotypes
Genetic Variation
Gene expression
Pathway
Molecular interactions
External references
Supporting evidence
ID History
- Gene history

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Gene: si:rp71-45g20.4 ENSDARG00000056917

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Description

si:rp71-45g20.4 [Source:ZFIN;Acc:ZDB-GENE-070912-709]

Location

Chromosome 9: 27,855,684-27,857,413 reverse strand.

GRCz11:CM002893.2

About this gene

This gene has 10 transcripts (splice variants), 8 orthologues and 65 paralogues.

Transcripts

Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSDART00000115313.4	si:rp71-45g20.4-201	1030	265aa	ENSDARP00000099598.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding	-	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1,
ENSDART00000143166.3	si:rp71-45g20.4-209	974	173aa	ENSDARP00000114299.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A7MCJ1	-
ENSDART00000177513.2	si:rp71-45g20.4-210	522	173aa	ENSDARP00000144544.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A7MCJ1	-
ENSDART00000141281.3	si:rp71-45g20.4-207	860	82aa	ENSDARP00000117189.1	Nonsense mediated decay	-	-
ENSDART00000138466.3	si:rp71-45g20.4-204	531	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript	-	-
ENSDART00000137660.3	si:rp71-45g20.4-203	731	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron	-	-
ENSDART00000141116.2	si:rp71-45g20.4-206	712	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron	-	-
ENSDART00000142231.3	si:rp71-45g20.4-208	710	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron	-	-
ENSDART00000135346.3	si:rp71-45g20.4-202	671	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron	-	-
ENSDART00000140753.2	si:rp71-45g20.4-205	599	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron	-	-

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Summary

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