Summary
- Splice variants
- Transcript comparison
- Gene alleles
Sequence
- Secondary Structure
Comparative Genomics
Ontologies
Phenotypes
Genetic Variation
Gene expression
Pathway
Molecular interactions
Regulation
External references
Supporting evidence
ID History
- Gene history

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Gene: c1galt1a ENSDARG00000055585

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Description

core 1 synthase, glycoprotein-N-acetylgalactosamine 3-beta-galactosyltransferase, 1a [Source:NCBI gene;Acc:557675]

Gene Synonyms

c1galt1l, fi11c09, wu:fi11c09, zgc:153355

Location

Chromosome 23: 28,092,083-28,136,739 forward strand.

GRCz11:CM002907.2

About this gene

This gene has 4 transcripts (splice variants), 149 orthologues and 4 paralogues.

Transcripts

Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSDART00000053958.7	c1galt1a-201	1610	408aa	ENSDARP00000053957.5	Gene/transcipt that contains an open reading frame (ORF).Protein coding	F1QGX4	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1,
ENSDART00000158260.2	c1galt1a-203	1664	408aa	ENSDARP00000134314.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	F1QGX4	APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1,
ENSDART00000144823.3	c1galt1a-202	1254	286aa	ENSDARP00000116354.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	E9QBT0	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENSDART00000182618.1	c1galt1a-204	1229	408aa	ENSDARP00000148771.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	F1QGX4	APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1,

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Summary

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