Summary
- Splice variants
- Transcript comparison
- Gene alleles
Sequence
- Secondary Structure
Comparative Genomics
Ontologies
Phenotypes
Genetic Variation
Gene expression
Pathway
Molecular interactions
Regulation
External references
Supporting evidence
ID History
- Gene history

Configure this page

Share this page

Bookmark this page

.

Gene: cbx1b ENSDARG00000054442

.

Description

chromobox homolog 1b (HP1 beta homolog Drosophila) [Source:ZFIN;Acc:ZDB-GENE-040625-68]

Gene Synonyms

zgc:86924

Location

Chromosome 12: 28,870,462-28,881,681 reverse strand.

GRCz11:CM002896.2

About this gene

This gene has 7 transcripts (splice variants), 287 orthologues and 12 paralogues.

Transcripts

Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSDART00000136593.3	cbx1b-202	1704	203aa	ENSDARP00000113004.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	Q6IQ71	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1,
ENSDART00000039667.7	cbx1b-201	1656	203aa	ENSDARP00000039666.5	Gene/transcipt that contains an open reading frame (ORF).Protein coding	Q6IQ71	APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1,
ENSDART00000139923.4	cbx1b-203	1050	127aa	ENSDARP00000127180.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	U3JB43	-
ENSDART00000148459.3	cbx1b-204	866	127aa	ENSDARP00000127465.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	U3JB43	-
ENSDART00000148912.2	cbx1b-206	784	89aa	ENSDARP00000123965.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	F8W478	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENSDART00000148668.3	cbx1b-205	546	155aa	ENSDARP00000124293.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	F8W402	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENSDART00000148991.2	cbx1b-207	529	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron	-	-

.

Summary

.

.