Summary
- Splice variants
- Transcript comparison
- Gene alleles
Sequence
- Secondary Structure
Comparative Genomics
Ontologies
- GO: Molecular function
- GO: Cellular component
- GO: Biological process
Phenotypes
Genetic Variation
Gene expression
Pathway
Molecular interactions
Regulation
External references
Supporting evidence
ID History
- Gene history

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Gene: sltm ENSDARG00000052728

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Description

SAFB-like, transcription modulator [Source:ZFIN;Acc:ZDB-GENE-040426-2647]

Gene Synonyms

wu:fd12b08, zgc:65985

Location

Chromosome 7: 30,532,636-30,560,450 reverse strand.

GRCz11:CM002891.2

About this gene

This gene has 9 transcripts (splice variants), 215 orthologues and 1 paralogue.

Transcripts

Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSDART00000142818.4	sltm-207	9342	983aa	ENSDARP00000115812.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	F1Q6F9	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1,
ENSDART00000182409.1	sltm-209	2002	458aa	ENSDARP00000154458.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A2R8QNZ9	-
ENSDART00000139546.2	sltm-203	805	269aa	ENSDARP00000120316.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	F1QCC1	5' and 3' truncations in transcript evidence prevent annotation of the start and the end of the CDS.CDS 5' and 3' incomplete,
ENSDART00000142680.3	sltm-205	449	142aa	ENSDARP00000142810.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A1D5NSJ4	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENSDART00000142480.3	sltm-204	595	131aa	ENSDARP00000142795.1	Nonsense mediated decay	A0A1D5NSI0	-
ENSDART00000173546.2	sltm-208	680	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript	-	-
ENSDART00000142723.4	sltm-206	1290	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron	-	-
ENSDART00000138298.2	sltm-201	740	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron	-	-
ENSDART00000139134.2	sltm-202	445	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron	-	-

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Summary

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