Summary
- Splice variants
- Transcript comparison
- Gene alleles
Sequence
- Secondary Structure
Comparative Genomics
Ontologies
- GO: Anatomical entity
Phenotypes
Genetic Variation
Gene expression
Pathway
Molecular interactions
Regulation
External references
Supporting evidence
ID History
- Gene history

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Gene: slc47a1 ENSDARG00000046012

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Description

solute carrier family 47 member 1 [Source:ZFIN;Acc:ZDB-GENE-050327-20]

Location

Chromosome 21: 39,941,184-39,976,240 forward strand.

GRCz11:CM002905.2

About this gene

This gene has 7 transcripts (splice variants), 347 orthologues and 4 paralogues.

Transcripts

Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSDART00000133604.3	slc47a1-201	2456	656aa	ENSDARP00000118758.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A8M9PCM0	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical,
ENSDART00000189718.1	slc47a1-206	5094	663aa	ENSDARP00000147802.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	-	-
ENSDART00000160875.3	slc47a1-205	5007	634aa	ENSDARP00000135774.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	-	APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1,
ENSDART00000190414.1	slc47a1-207	1892	629aa	ENSDARP00000157092.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	-	-
ENSDART00000144435.2	slc47a1-204	1650	363aa	ENSDARP00000121721.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	-	-
ENSDART00000137740.2	slc47a1-203	903	150aa	ENSDARP00000118319.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	-	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
ENSDART00000135235.3	slc47a1-202	899	226aa	ENSDARP00000120491.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,

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Summary

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