Summary
- Splice variants
- Transcript comparison
- Gene alleles
Sequence
- Secondary Structure
Comparative Genomics
Ontologies
- GO: Cellular component
- GO: Molecular function
- GO: Biological process
Phenotypes
Genetic Variation
Gene expression
Pathway
Molecular interactions
External references
Supporting evidence
ID History
- Gene history

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Gene: snx20 ENSDARG00000045554

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Description

sorting nexin 20 [Source:ZFIN;Acc:ZDB-GENE-100806-1]

Location

Chromosome 25: 35,957,603-35,963,241 reverse strand.

GRCz11:CM002909.2

About this gene

This gene has 4 transcripts (splice variants), 185 orthologues and 1 paralogue.

Transcripts

Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSDART00000153612.3	snx20-202	1213	309aa	ENSDARP00000127957.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A8M2BA68	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1,
ENSDART00000073434.6	snx20-201	846	281aa	ENSDARP00000067925.6	Gene/transcipt that contains an open reading frame (ORF).Protein coding	-	-
ENSDART00000157334.2	snx20-204	703	35aa	ENSDARP00000129686.1	Nonsense mediated decay	-	-
ENSDART00000153919.2	snx20-203	854	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron	-	-

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Summary

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