Summary
- Splice variants
- Transcript comparison
- Gene alleles
Sequence
- Secondary Structure
Comparative Genomics
Ontologies
- GO: Molecular function
- GO: Biological process
- GO: Cellular component
Phenotypes
Genetic Variation
Gene expression
Pathway
Molecular interactions
Regulation
External references
Supporting evidence
ID History
- Gene history

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Gene: exoc1 ENSDARG00000043019

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Description

exocyst complex component 1 [Source:ZFIN;Acc:ZDB-GENE-030131-1057]

Gene Synonyms

sec3l1, wu:fb58e03, zgc:64145

Location

Chromosome 20: 25,853,012-25,878,607 reverse strand.

GRCz11:CM002904.2

About this gene

This gene has 5 transcripts (splice variants), 209 orthologues and 3 paralogues.

Transcripts

Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSDART00000063154.5	exoc1-201	3240	892aa	ENSDARP00000063153.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A3KPP9	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
ENSDART00000177333.2	exoc1-204	2705	898aa	ENSDARP00000143958.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A286Y9W9	APPRIS P5: Where the APPRIS core modules are unable to choose a clear principal variant and none of the candidate variants are annotated by CCDS, APPRIS selects the longest of the candidate isoforms as the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P5,
ENSDART00000184619.1	exoc1-205	2642	877aa	ENSDARP00000144820.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A2R8PY61	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
ENSDART00000153347.2	exoc1-203	636	160aa	ENSDARP00000127319.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	U3JAQ0	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENSDART00000145989.2	exoc1-202	533	178aa	ENSDARP00000116284.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	F1R381	5' and 3' truncations in transcript evidence prevent annotation of the start and the end of the CDS.CDS 5' and 3' incomplete,

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Summary

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