Summary
- Splice variants
- Transcript comparison
- Gene alleles
Sequence
- Secondary Structure
Comparative Genomics
Ontologies
- GO: Anatomical entity
Phenotypes
Genetic Variation
Gene expression
Pathway
Molecular interactions
External references
Supporting evidence
ID History
- Gene history

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Gene: tsc22d2 ENSDARG00000041839

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Description

TSC22 domain family 2 [Source:NCBI gene (formerly Entrezgene);Acc:378875]

Location

Chromosome 22: 35,205,017-35,263,902 forward strand.

GRCz11:CM002906.2

About this gene

This gene has 5 transcripts (splice variants), 86 orthologues and 4 paralogues.

Transcripts

Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSDART00000061315.8	tsc22d2-201	3718	556aa	ENSDARP00000061314.6	Gene/transcipt that contains an open reading frame (ORF).Protein coding	Q6TEL2	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
ENSDART00000189203.1	tsc22d2-205	3774	577aa	ENSDARP00000154491.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A2R8RWC4	APPRIS P2: Where the APPRIS core modules are unable to choose a clear principal variant (approximately 25% of human protein coding genes), the database chooses two or more of the CDS variants as "candidates" to be the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P2,
ENSDART00000146430.2	tsc22d2-202	3718	556aa	ENSDARP00000120772.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	Q6TEL2	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
ENSDART00000150467.2	tsc22d2-204	1180	349aa	ENSDARP00000125584.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	-	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
ENSDART00000147827.2	tsc22d2-203	859	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript	-	-

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Summary

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