Summary
- Splice variants
- Transcript comparison
- Gene alleles
Sequence
- Secondary Structure
Comparative Genomics
Ontologies
Phenotypes
Genetic Variation
Gene expression
Pathway
Molecular interactions
Regulation
External references
Supporting evidence
ID History
- Gene history

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Gene: nr5a5 ENSDARG00000039116

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Description

nuclear receptor subfamily 5, group A, member 5 [Source:ZFIN;Acc:ZDB-GENE-030131-4652]

Gene Synonyms

fd46g06, ff1c, wu:fd46g06, zgc:111842, zgc:153866

Location

Chromosome 3: 53,457,192-53,465,249 reverse strand.

GRCz11:CM002887.2

About this gene

This gene has 4 transcripts (splice variants), 88 orthologues and 3 paralogues.

Transcripts

Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSDART00000125515.3	nr5a5-202	1748	537aa	ENSDARP00000105488.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	B3DKN2	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS P5: Where the APPRIS core modules are unable to choose a clear principal variant and none of the candidate variants are annotated by CCDS, APPRIS selects the longest of the candidate isoforms as the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P5,
ENSDART00000057123.8	nr5a5-201	2049	511aa	ENSDARP00000057122.6	Gene/transcipt that contains an open reading frame (ORF).Protein coding	F1QKV6	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
ENSDART00000143096.2	nr5a5-203	765	213aa	ENSDARP00000113112.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	E9QGY9	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENSDART00000148131.2	nr5a5-204	758	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron	-	-

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Summary

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