Summary
- Splice variants
- Transcript comparison
- Gene alleles
Sequence
- Secondary Structure
Comparative Genomics
Ontologies
- GO: Molecular function
- GO: Biological process
- GO: Cellular component
Phenotypes
Genetic Variation
Gene expression
Pathway
Molecular interactions
Regulation
External references
Supporting evidence
ID History
- Gene history

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Gene: si:ch211-173p18.3 ENSDARG00000035821

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Description

si:ch211-173p18.3 [Source:ZFIN;Acc:ZDB-GENE-060503-672]

Gene Synonyms

si:ch211-173p18.2

Location

Chromosome 19: 40,115,977-40,165,799 forward strand.

GRCz11:CM002903.2

About this gene

This gene has 8 transcripts (splice variants), 104 orthologues and 13 paralogues.

Transcripts

Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSDART00000143966.4	si:ch211-173p18.3-203	5133	1360aa	ENSDARP00000123193.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	F6NVC8	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1,
ENSDART00000049968.7	si:ch211-173p18.3-201	3705	1084aa	ENSDARP00000049967.6	Gene/transcipt that contains an open reading frame (ORF).Protein coding	F1R3K9	-
ENSDART00000151276.2	si:ch211-173p18.3-206	784	41aa	ENSDARP00000125960.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	I3ISR9	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENSDART00000139802.4	si:ch211-173p18.3-202	727	226aa	ENSDARP00000113987.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	F6P1T9	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENSDART00000151188.2	si:ch211-173p18.3-204	583	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript	-	-
ENSDART00000151295.2	si:ch211-173p18.3-207	917	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron	-	-
ENSDART00000151242.2	si:ch211-173p18.3-205	845	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron	-	-
ENSDART00000151763.2	si:ch211-173p18.3-208	755	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron	-	-

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Summary

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