Summary
- Splice variants
- Transcript comparison
- Gene alleles
Sequence
- Secondary Structure
Comparative Genomics
- Genomic alignments
- Gene tree
- Gene gain/loss tree
- Orthologues
- Paralogues
Ontologies
- GO: Anatomical entity
Phenotypes
Genetic Variation
Gene expression
Pathway
Molecular interactions
External references
Supporting evidence
ID History
- Gene history

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Gene: xbp1 ENSDARG00000035622

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Description

X-box binding protein 1 [Source:NCBI gene (formerly Entrezgene);Acc:140614]

Location

Chromosome 5: 15,944,411-15,948,920 reverse strand.

GRCz11:CM002889.2

About this gene

This gene has 4 transcripts (splice variants), 201 orthologues and is associated with 9 phenotypes.

Transcripts

Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSDART00000124467.4	xbp1-203	1728	263aa	ENSDARP00000106586.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	Q90X27	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1,
ENSDART00000051649.7	xbp1-201	2135	75aa	ENSDARP00000051648.7	Gene/transcipt that contains an open reading frame (ORF).Protein coding	-	-
ENSDART00000124002.3	xbp1-202	2135	75aa	ENSDARP00000140644.1	Nonsense mediated decay	-	-
ENSDART00000139390.2	xbp1-204	813	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron	-	-

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Summary

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