Summary
- Splice variants
- Transcript comparison
- Gene alleles
Sequence
- Secondary Structure
Comparative Genomics
Ontologies
Phenotypes
Genetic Variation
Gene expression
Pathway
Molecular interactions
Regulation
External references
Supporting evidence
ID History
- Gene history

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Gene: tmtopsb ENSDARG00000032246

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Description

teleost multiple tissue opsin b [Source:ZFIN;Acc:ZDB-GENE-091118-50]

Gene Synonyms

TMT-opsin 1B, si:ch211-174k6.1, tmt3b

Location

Chromosome 24: 26,134,029-26,197,398 forward strand.

GRCz11:CM002908.2

About this gene

This gene has 3 transcripts (splice variants), 84 orthologues and 40 paralogues.

Transcripts

Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSDART00000185134.1	tmtopsb-203	3003	448aa	ENSDARP00000147895.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A2R8Q4C0	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS P5: Where the APPRIS core modules are unable to choose a clear principal variant and none of the candidate variants are annotated by CCDS, APPRIS selects the longest of the candidate isoforms as the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P5,
ENSDART00000038824.8	tmtopsb-201	1194	397aa	ENSDARP00000037563.7	Gene/transcipt that contains an open reading frame (ORF).Protein coding	R9R6L5	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
ENSDART00000139017.2	tmtopsb-202	777	259aa	ENSDARP00000121360.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	F1R929	5' and 3' truncations in transcript evidence prevent annotation of the start and the end of the CDS.CDS 5' and 3' incomplete,

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Summary

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