Summary
- Splice variants
- Transcript comparison
- Gene alleles
Sequence
- Secondary Structure
Comparative Genomics
Ontologies
- GO: Anatomical entity
Phenotypes
Genetic Variation
Gene expression
Pathway
Molecular interactions
External references
Supporting evidence
ID History
- Gene history

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Gene: hmg20a ENSDARG00000031198

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Description

high mobility group 20A [Source:NCBI gene (formerly Entrezgene);Acc:326908]

Location

Chromosome 25: 7,241,084-7,336,346 forward strand.

GRCz11:CM002909.2

About this gene

This gene has 5 transcripts (splice variants), 205 orthologues and 19 paralogues.

Transcripts

Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSDART00000104712.5	hmg20a-201	1478	291aa	ENSDARP00000095483.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A3KNQ1	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1,
ENSDART00000190501.1	hmg20a-204	1271	291aa	ENSDARP00000147000.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A3KNQ1	APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1,
ENSDART00000190588.1	hmg20a-205	1107	291aa	ENSDARP00000157579.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A3KNQ1	APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1,
ENSDART00000184836.1	hmg20a-203	1079	291aa	ENSDARP00000148449.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A3KNQ1	APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1,
ENSDART00000142934.2	hmg20a-202	836	198aa	ENSDARP00000119454.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,

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Summary

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