Summary
- Splice variants
- Transcript comparison
- Gene alleles
Sequence
- Secondary Structure
Comparative Genomics
Ontologies
- GO: Molecular function
- GO: Biological process
- GO: Cellular component
Phenotypes
Genetic Variation
Gene expression
Pathway
Molecular interactions
Regulation
External references
Supporting evidence
ID History
- Gene history

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Gene: mbd1b ENSDARG00000025699

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Description

methyl-CpG binding domain protein 1b [Source:ZFIN;Acc:ZDB-GENE-030131-6318]

Gene Synonyms

mbd1, wu:fi45g12

Location

Chromosome 11: 25,560,072-25,576,199 forward strand.

GRCz11:CM002895.2

About this gene

This gene has 3 transcripts (splice variants), 192 orthologues and 2 paralogues.

Transcripts

Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSDART00000033914.8	mbd1b-201	3579	962aa	ENSDARP00000031774.8	Gene/transcipt that contains an open reading frame (ORF).Protein coding	F1R9V0	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS P5: Where the APPRIS core modules are unable to choose a clear principal variant and none of the candidate variants are annotated by CCDS, APPRIS selects the longest of the candidate isoforms as the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P5,
ENSDART00000124131.4	mbd1b-202	3702	961aa	ENSDARP00000109727.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	F1QDB7	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
ENSDART00000147179.2	mbd1b-203	393	65aa	ENSDARP00000115553.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	E9QG31	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,

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Summary

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