Summary
- Splice variants
- Transcript comparison
- Gene alleles
Sequence
- Secondary Structure
Comparative Genomics
Ontologies
- GO: Anatomical entity
Phenotypes
Genetic Variation
Gene expression
Pathway
Molecular interactions
Regulation
External references
Supporting evidence
ID History
- Gene history

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Gene: PATJ ENSDARG00000024964

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Description

PATJ crumbs cell polarity complex component [Source:ZFIN;Acc:ZDB-GENE-030616-129]

Location

Chromosome 22: 16,569,123-16,759,151 reverse strand.

GRCz11:CM002906.2

About this gene

This gene has 4 transcripts (splice variants), 244 orthologues and 7 paralogues.

Transcripts

Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSDART00000191880.1	PATJ-203	6663	1914aa	ENSDARP00000157175.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A8M2B8K6	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1,
ENSDART00000132829.3	PATJ-202	6560	1831aa	ENSDARP00000116882.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	Q1LXN3	-
ENSDART00000036467.8	PATJ-204	5496	1831aa	ENSDARP00000035306.7	Gene/transcipt that contains an open reading frame (ORF).Protein coding	Q1LXN3	-
ENSDART00000145208.2	PATJ-201	553	98aa	ENSDARP00000122825.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,

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Summary

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