Summary
- Splice variants
- Transcript comparison
- Gene alleles
Sequence
- Secondary Structure
Comparative Genomics
Ontologies
- GO: Molecular function
- GO: Biological process
- GO: Cellular component
Phenotypes
Genetic Variation
Gene expression
Pathway
Molecular interactions
Regulation
External references
Supporting evidence
ID History
- Gene history

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Gene: usp6nl ENSDARG00000022187

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Description

USP6 N-terminal like [Source:ZFIN;Acc:ZDB-GENE-041210-192]

Gene Synonyms

si:ch211-198d18.2

Location

Chromosome 4: 23,771,034-23,873,924 reverse strand.

GRCz11:CM002888.2

About this gene

This gene has 3 transcripts (splice variants), 211 orthologues and 40 paralogues.

Transcripts

Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSDART00000123199.3	usp6nl-202	6229	827aa	ENSDARP00000107300.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	F1R5Z9	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS P5: Where the APPRIS core modules are unable to choose a clear principal variant and none of the candidate variants are annotated by CCDS, APPRIS selects the longest of the candidate isoforms as the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P5,
ENSDART00000100391.4	usp6nl-201	4676	747aa	ENSDARP00000091164.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	F1QF05	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
ENSDART00000143571.2	usp6nl-203	1270	423aa	ENSDARP00000113866.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	Q5VSE2	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,

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Summary

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