Summary
- Splice variants
- Transcript comparison
- Gene alleles
Sequence
- Secondary Structure
Comparative Genomics
Ontologies
- GO: Molecular function
- GO: Biological process
- GO: Cellular component
Phenotypes
Genetic Variation
Gene expression
Pathway
Molecular interactions
Regulation
External references
Supporting evidence
ID History
- Gene history

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Gene: vps9d1 ENSDARG00000019195

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Description

VPS9 domain containing 1 [Source:ZFIN;Acc:ZDB-GENE-050306-57]

Gene Synonyms

c18h16orf7, id:ibd5127, wu:fa56d01, zgc:113159, zgc:158780

Location

Chromosome 18: 14,633,974-14,668,398 forward strand.

GRCz11:CM002902.2

About this gene

This gene has 7 transcripts (splice variants), 201 orthologues and 8 paralogues.

Transcripts

Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSDART00000133834.3	vps9d1-201	2995	659aa	ENSDARP00000117841.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A5WVP1	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS P5: Where the APPRIS core modules are unable to choose a clear principal variant and none of the candidate variants are annotated by CCDS, APPRIS selects the longest of the candidate isoforms as the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P5,
ENSDART00000147351.2	vps9d1-206	2172	502aa	ENSDARP00000120482.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A5WVN9	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
ENSDART00000138995.3	vps9d1-203	989	232aa	ENSDARP00000122725.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A5WVP0	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENSDART00000144603.2	vps9d1-205	760	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript	-	-
ENSDART00000147465.2	vps9d1-207	715	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron	-	-
ENSDART00000141874.2	vps9d1-204	595	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron	-	-
ENSDART00000137284.2	vps9d1-202	359	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron	-	-

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Summary

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