Summary
- Splice variants
- Transcript comparison
- Gene alleles
Sequence
- Secondary Structure
Comparative Genomics
Ontologies
- GO: Anatomical entity
Phenotypes
Genetic Variation
Gene expression
Pathway
Molecular interactions
Regulation
External references
Supporting evidence
ID History
- Gene history

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Gene: SPTLC2 ENSDARG00000018976

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Description

serine palmitoyltransferase, long chain base subunit 2a [Source:ZFIN;Acc:ZDB-GENE-050522-23]

Location

Chromosome 17: 17,804,727-17,856,118 forward strand.

GRCz11:CM002901.2

About this gene

This gene has 4 transcripts (splice variants), 209 orthologues and 6 paralogues.

Transcripts

Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	Flags
ENSDART00000123350.3	SPTLC2-204	1878	558aa	ENSDARP00000109825.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1,
ENSDART00000149494.3	SPTLC2-203	2017	236aa	ENSDARP00000123952.1	Nonsense mediated decay	-
ENSDART00000148488.2	SPTLC2-201	703	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript	-
ENSDART00000148521.2	SPTLC2-202	539	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript	-

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Summary

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