Summary
- Splice variants
- Transcript comparison
- Gene alleles
Sequence
- Secondary Structure
Comparative Genomics
Ontologies
- GO: Anatomical entity
Phenotypes
Genetic Variation
Gene expression
Pathway
Molecular interactions
Regulation
External references
Supporting evidence
ID History
- Gene history

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Gene: NOVA1 ENSDARG00000017673

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Description

NOVA alternative splicing regulator 2 [Source:ZFIN;Acc:ZDB-GENE-080211-1]

Location

Chromosome 15: 28,685,625-28,766,824 forward strand.

GRCz11:CM002899.2

About this gene

This gene has 5 transcripts (splice variants), 170 orthologues, 15 paralogues and is associated with 8 phenotypes.

Transcripts

Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSDART00000155815.3	NOVA1-201	8894	517aa	ENSDARP00000127510.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	X1WBB9	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical,
ENSDART00000166036.3	NOVA1-205	2372	518aa	ENSDARP00000135255.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	-	-
ENSDART00000188797.1	NOVA1-204	2309	497aa	ENSDARP00000151685.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	-	APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1,
ENSDART00000060244.4	NOVA1-202	1951	496aa	ENSDARP00000060243.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding	F1R4G7	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENSDART00000154371.2	NOVA1-203	356	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript	-	-

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Summary

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