SRY-box transcription factor 6 [Source:ZFIN;Acc:ZDB-GENE-081120-6]
Chromosome 7: 27,250,012-27,454,645 forward strand.
GRCz11:CM002891.2
This gene has 10 transcripts (splice variants), 208 orthologues, 27 paralogues and is associated with 13 phenotypes.
| Transcript ID | Name | bp | Protein | Translation ID | Biotype | UniProt Match | Flags |
|---|---|---|---|---|---|---|---|
| ENSDART00000191138.1 | SOX6-207 | 2639 | 816aa | ENSDARP00000153978.1 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | - | A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, |
| ENSDART00000173962.2 | SOX6-203 | 7908 | 785aa | ENSDARP00000142819.1 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | - | APPRIS ALT1: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that is conserved in at least three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT1, |
| ENSDART00000150068.4 | SOX6-201 | 6184 | 768aa | ENSDARP00000124730.2 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | F8W2H3 | APPRIS P4: Where the APPRIS core modules are unable to choose a clear principal CDS and there is more than one variant with a distinct (but consecutive) CCDS identifiers, APPRIS selects the longest CCDS isoform as the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P4, |
| ENSDART00000193058.1 | SOX6-206 | 3045 | 768aa | ENSDARP00000150954.1 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | F8W2H3 | APPRIS P4: Where the APPRIS core modules are unable to choose a clear principal CDS and there is more than one variant with a distinct (but consecutive) CCDS identifiers, APPRIS selects the longest CCDS isoform as the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P4, |
| ENSDART00000188542.1 | SOX6-209 | 3004 | 784aa | ENSDARP00000145713.1 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | - | APPRIS ALT1: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that is conserved in at least three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT1, |
| ENSDART00000185161.1 | SOX6-210 | 2385 | 768aa | ENSDARP00000156079.1 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | F8W2H3 | APPRIS P4: Where the APPRIS core modules are unable to choose a clear principal CDS and there is more than one variant with a distinct (but consecutive) CCDS identifiers, APPRIS selects the longest CCDS isoform as the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P4, |
| ENSDART00000100998.4 | SOX6-208 | 2350 | 768aa | ENSDARP00000091770.4 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | F8W2H3 | APPRIS P4: Where the APPRIS core modules are unable to choose a clear principal CDS and there is more than one variant with a distinct (but consecutive) CCDS identifiers, APPRIS selects the longest CCDS isoform as the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P4, |
| ENSDART00000173521.2 | SOX6-202 | 749 | 121aa | ENSDARP00000142959.1 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | - | 3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete, |
| ENSDART00000150225.2 | SOX6-204 | 874 | No protein | - | An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron | - | - |
| ENSDART00000149843.2 | SOX6-205 | 724 | No protein | - | An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron | - | - |
