Summary
- Splice variants
- Transcript comparison
- Gene alleles
Sequence
- Secondary Structure
Comparative Genomics
Ontologies
- GO: Anatomical entity
Phenotypes
Genetic Variation
Gene expression
Pathway
Molecular interactions
External references
Supporting evidence
ID History
- Gene history

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Gene: ccm2 ENSDARG00000013705

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Description

CCM2 scaffold protein [Source:NCBI gene (formerly Entrezgene);Acc:436586]

Location

Chromosome 20: 18,774,129-18,794,789 reverse strand.

GRCz11:CM002904.2

About this gene

This gene has 3 transcripts (splice variants), 203 orthologues, 1 paralogue and is associated with 74 phenotypes.

Transcripts

Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSDART00000003834.10	ccm2-201	1886	455aa	ENSDARP00000022543.8	Gene/transcipt that contains an open reading frame (ORF).Protein coding	Q6DRP4-1	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS P4: Where the APPRIS core modules are unable to choose a clear principal CDS and there is more than one variant with a distinct (but consecutive) CCDS identifiers, APPRIS selects the longest CCDS isoform as the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P4,
ENSDART00000182240.1	ccm2-203	1350	449aa	ENSDARP00000155962.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0AB32T6M1	APPRIS ALT1: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that is conserved in at least three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT1,
ENSDART00000152753.2	ccm2-202	720	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript	-	-

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Summary

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