Summary
- Splice variants
- Transcript comparison
- Gene alleles
Sequence
- Secondary Structure
Comparative Genomics
Ontologies
- GO: Anatomical entity
Phenotypes
Genetic Variation
Gene expression
Pathway
Molecular interactions
Regulation
External references
Supporting evidence
ID History
- Gene history

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Gene: SLC8A1 ENSDARG00000013422

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Description

solute carrier family 8 member 1a [Source:ZFIN;Acc:ZDB-GENE-050809-1]

Location

Chromosome 11: 30,535,943-30,612,166 reverse strand.

GRCz11:CM002895.2

About this gene

This gene has 4 transcripts (splice variants), 213 orthologues, 12 paralogues and is associated with 38 phenotypes.

Transcripts

Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSDART00000089803.7	SLC8A1-201	3647	969aa	ENSDARP00000084236.5	Gene/transcipt that contains an open reading frame (ORF).Protein coding	F1R4F4	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS ALT1: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that is conserved in at least three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT1,
ENSDART00000177984.2	SLC8A1-204	3289	933aa	ENSDARP00000144549.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A286YBI0	-
ENSDART00000172244.2	SLC8A1-203	2925	974aa	ENSDARP00000134979.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	Q32SG8	APPRIS P4: Where the APPRIS core modules are unable to choose a clear principal CDS and there is more than one variant with a distinct (but consecutive) CCDS identifiers, APPRIS selects the longest CCDS isoform as the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P4,
ENSDART00000046800.8	SLC8A1-202	2892	932aa	ENSDARP00000046799.8	Gene/transcipt that contains an open reading frame (ORF).Protein coding	-	-

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Summary

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