Summary
- Splice variants
- Transcript comparison
- Gene alleles
Sequence
- Secondary Structure
Comparative Genomics
Ontologies
- GO: Anatomical entity
Phenotypes
Genetic Variation
Gene expression
Pathway
Molecular interactions
Regulation
External references
Supporting evidence
ID History
- Gene history

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Gene: COL11A2 ENSDARG00000012422

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Description

collagen, type XI, alpha 2 [Source:ZFIN;Acc:ZDB-GENE-000208-23]

Location

Chromosome 19: 7,179,740-7,225,206 reverse strand.

GRCz11:CM002903.2

About this gene

This gene has 4 transcripts (splice variants), 196 orthologues, 52 paralogues and is associated with 44 phenotypes.

Transcripts

Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSDART00000151138.3	COL11A2-203	6544	1803aa	ENSDARP00000125963.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A8M1P8Y1	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical,
ENSDART00000104799.5	COL11A2-202	6965	1695aa	ENSDARP00000095569.4	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A8M1NB54	-
ENSDART00000133179.4	COL11A2-204	5476	1721aa	ENSDARP00000119303.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	F1R5X4	APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1,
ENSDART00000128331.4	COL11A2-201	1565	423aa	ENSDARP00000108486.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,

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Summary

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