Summary
- Splice variants
- Transcript comparison
- Gene alleles
Sequence
- Secondary Structure
Comparative Genomics
Ontologies
- GO: Anatomical entity
Phenotypes
Genetic Variation
Gene expression
Pathway
Molecular interactions
Regulation
External references
Supporting evidence
ID History
- Gene history

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Gene: OTX2 ENSDARG00000011235

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Description

orthodenticle homeobox 2b [Source:ZFIN;Acc:ZDB-GENE-980526-406]

Location

Chromosome 17: 44,244,659-44,249,720 reverse strand.

GRCz11:CM002901.2

About this gene

This gene has 3 transcripts (splice variants), 210 orthologues, 56 paralogues and is associated with 27 phenotypes.

Transcripts

Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSDART00000126097.4	OTX2-201	2212	289aa	ENSDARP00000111153.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	Q1RM25 Q91981	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1,
ENSDART00000008816.8	OTX2-202	2162	289aa	ENSDARP00000020202.5	Gene/transcipt that contains an open reading frame (ORF).Protein coding	Q1RM25 Q91981	APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1,
ENSDART00000156648.2	OTX2-203	922	205aa	ENSDARP00000128250.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,

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Summary

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