protein tyrosine phosphatase 4A1 [Source:ZFIN;Acc:ZDB-GENE-041121-11]
Chromosome 11: 11,267,493-11,274,919 forward strand.
GRCz11:CM002895.2
This gene has 9 transcripts (splice variants), 272 orthologues and 13 paralogues.
| Transcript ID | Name | bp | Protein | Translation ID | Biotype | UniProt Match | Flags |
|---|---|---|---|---|---|---|---|
| ENSDART00000026814.10 | PTP4A1-205 | 2002 | 173aa | ENSDARP00000023049.7 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | F1QSC9 | A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1, |
| ENSDART00000148425.3 | PTP4A1-208 | 1411 | 203aa | ENSDARP00000124821.2 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | - | - |
| ENSDART00000173346.2 | PTP4A1-201 | 821 | 80aa | ENSDARP00000142090.1 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | - | 3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete, |
| ENSDART00000129843.3 | PTP4A1-204 | 727 | 164aa | ENSDARP00000106040.2 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | - | 5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete, |
| ENSDART00000190678.1 | PTP4A1-209 | 541 | 173aa | ENSDARP00000145165.1 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | F1QSC9 | APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1, |
| ENSDART00000151926.2 | PTP4A1-202 | 135 | 44aa | ENSDARP00000126441.1 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | - | - |
| ENSDART00000169001.2 | PTP4A1-206 | 1109 | 184aa | ENSDARP00000137525.1 | Nonsense mediated decay | A0A0R4IN05 | - |
| ENSDART00000166489.2 | PTP4A1-203 | 806 | 201aa | ENSDARP00000139705.1 | Nonsense mediated decay | - | 5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete, |
| ENSDART00000172939.2 | PTP4A1-207 | 942 | No protein | - | An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron | - | - |
