Summary
- Splice variants
- Transcript comparison
- Gene alleles
Sequence
- Secondary Structure
Comparative Genomics
Ontologies
- GO: Anatomical entity
Phenotypes
Genetic Variation
Gene expression
Pathway
Molecular interactions
Regulation
External references
Supporting evidence
ID History
- Gene history

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Gene: prdm9 ENSDARG00000005382

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Description

PR domain containing 9 [Source:ZFIN;Acc:ZDB-GENE-040426-1319]

Gene Synonyms

zgc:63970

Location

Chromosome 12: 9,781,524-9,796,237 reverse strand.

GRCz11:CM002896.2

About this gene

This gene has 2 transcripts (splice variants), 27 orthologues and 2 paralogues.

Transcripts

Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSDART00000027321.10	prdm9-201	2918	853aa	ENSDARP00000026323.8	Gene/transcipt that contains an open reading frame (ORF).Protein coding	Q6P2A1	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1,
ENSDART00000149344.2	prdm9-202	453	84aa	ENSDARP00000123833.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,

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Summary

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