Summary
- Splice variants
- Transcript comparison
- Gene alleles
Sequence
- Secondary Structure
Comparative Genomics
- Genomic alignments
- Gene tree
- Gene gain/loss tree
- Orthologues
- Paralogues
Ontologies
- GO: Anatomical entity
Phenotypes
Genetic Variation
Gene expression
Pathway
Molecular interactions
Regulation
External references
Supporting evidence
ID History
- Gene history

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Gene: COL8A1 ENSDARG00000003533

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Description

collagen, type VIII, alpha 1b [Source:ZFIN;Acc:ZDB-GENE-060503-140]

Location

Chromosome 22: 28,647,130-28,668,442 reverse strand.

GRCz11:CM002906.2

About this gene

This gene has 3 transcripts (splice variants), 178 orthologues and 32 paralogues.

Transcripts

Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSDART00000154717.3	COL8A1-202	3140	733aa	ENSDARP00000129340.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	X1WGI4	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1,
ENSDART00000019846.7	COL8A1-201	2945	731aa	ENSDARP00000006367.6	Gene/transcipt that contains an open reading frame (ORF).Protein coding	-	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
ENSDART00000182377.1	COL8A1-203	2314	733aa	ENSDARP00000156329.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	X1WGI4	APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1,

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Summary

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