Summary
- Splice variants
- Transcript comparison
- Gene alleles
Sequence
- Secondary Structure
Comparative Genomics
Ontologies
- GO: Anatomical entity
Phenotypes
Genetic Variation
Gene expression
Pathway
Molecular interactions
Regulation
External references
Supporting evidence
ID History
- Gene history

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Gene: SPI1 ENSDARG00000000767

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Description

Spi-1 proto-oncogene b [Source:ZFIN;Acc:ZDB-GENE-980526-164]

Location

Chromosome 7: 32,644,673-32,659,353 reverse strand.

GRCz11:CM002891.2

About this gene

This gene has 4 transcripts (splice variants), 191 orthologues, 29 paralogues and is associated with 42 phenotypes.

Transcripts

Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSDART00000036729.7	SPI1-202	2373	296aa	ENSDARP00000029369.5	Gene/transcipt that contains an open reading frame (ORF).Protein coding	Q78AM8	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS ALT1: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that is conserved in at least three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT1,
ENSDART00000126831.2	SPI1-204	2272	265aa	ENSDARP00000109500.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	Q8AW41	APPRIS ALT1: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that is conserved in at least three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT1,
ENSDART00000093279.5	SPI1-203	1228	266aa	ENSDARP00000087711.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding	F1R668	APPRIS P4: Where the APPRIS core modules are unable to choose a clear principal CDS and there is more than one variant with a distinct (but consecutive) CCDS identifiers, APPRIS selects the longest CCDS isoform as the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P4,
ENSDART00000173776.2	SPI1-201	688	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron	-	-

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Summary

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