Summary
- Splice variants
- Transcript comparison
- Gene alleles
Sequence
- Secondary Structure
Comparative Genomics
Ontologies
- GO: Anatomical entity
Phenotypes
Genetic Variation
- Variant table
- Variant image
- Structural variants
Gene expression
Pathway
Molecular interactions
External references
Supporting evidence
ID History
- Gene history

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Gene: xrn1 ENSCCRG00000034680

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Description

5'-3' exoribonuclease 1 [Source:ZFIN;Acc:ZDB-GENE-040426-1203]

Location

Primary_assembly CAJNDQ010000022.1: 18,670,256-18,692,945 forward strand.

About this gene

This gene has 10 transcripts (splice variants), 217 orthologues and 3 paralogues.

Transcripts

Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSCCRT00000117871.1	xrn1-209	6732	1688aa	ENSCCRP00000137404.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A9J7ZWP3	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical,
ENSCCRT00000172266.1	xrn1-207	6729	1639aa	ENSCCRP00000145298.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A9J8AM25	-
ENSCCRT00000132772.1	xrn1-203	6142	967aa	ENSCCRP00000107287.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A9J7XHW4	-
ENSCCRT00000172346.1	xrn1-210	5433	1672aa	ENSCCRP00000152257.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A9J8B5P8	-
ENSCCRT00000163714.1	xrn1-206	5220	1601aa	ENSCCRP00000133156.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A9J7ZR42	-
ENSCCRT00000070988.2	xrn1-208	4860	1481aa	ENSCCRP00000065511.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A9R1SJ94	-
ENSCCRT00000146833.1	xrn1-202	4836	1473aa	ENSCCRP00000111246.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A9J7XXA5	-
ENSCCRT00000070939.2	xrn1-205	4806	1428aa	ENSCCRP00000065464.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A8C1DQK9	-
ENSCCRT00000070990.2	xrn1-204	4755	1446aa	ENSCCRP00000065513.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A8C1DQD7	-
ENSCCRT00000070994.2	xrn1-201	1341	446aa	ENSCCRP00000065517.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A8C1DNZ2	-

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Summary

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