Transcript: ENSBTAT00000061396.5 SMC5-201

Description

structural maintenance of chromosomes 5 [Source:VGNC Symbol;Acc:VGNC:35002]

Location

About this transcript

This transcript has 25 exons, is annotated with 25 domains and features, is associated with 4797 variant alleles and maps to 12 oligo probes.

Gene

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSBTAT00000061396.5	SMC5-201	5664	1104aa	ENSBTAP00000053371.4	Gene/transcipt that contains an open reading frame (ORF).Protein coding	F1MPW4	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS P4: Where the APPRIS core modules are unable to choose a clear principal CDS and there is more than one variant with a distinct (but consecutive) CCDS identifiers, APPRIS selects the longest CCDS isoform as the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P4,
ENSBTAT00000079499.3	SMC5-202	5618	1089aa	ENSBTAP00000057777.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A3Q1LMB6	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,

Summary

Statistics

Exons: 25, Coding exons: 25, Transcript length: 5,664 bps, Translation length: 1,104 residues

Version

ENSBTAT00000061396.5

Type

Protein coding

Annotation Method

Annotation produced by the Ensembl genebuild.