Transcript: ENSBTAT00000043279.4 SGCA-202

Description

sarcoglycan alpha [Source:VGNC Symbol;Acc:VGNC:34535]

Location

Primary_assembly 19: 36,482,941-36,492,119 reverse strand.

About this transcript

This transcript has 10 exons, is annotated with 18 domains and features, is associated with 1977 variant alleles and maps to 12 oligo probes.

Gene

This transcript is a product of gene ENSBTAG00000003956.8 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSBTAT00000043279.4	SGCA-202	1674	429aa	ENSBTAP00000040861.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding	F1N4P2	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS P2: Where the APPRIS core modules are unable to choose a clear principal variant (approximately 25% of human protein coding genes), the database chooses two or more of the CDS variants as "candidates" to be the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P2,
ENSBTAT00000133613.1	SGCA-203	1453	387aa	ENSBTAP00000085502.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0AAA9SH21	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
ENSBTAT00000005180.5	SGCA-201	1229	347aa	ENSBTAP00000005180.5	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A3S5ZPC5	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,

Summary

Statistics

Exons: 10, Coding exons: 9, Transcript length: 1,674 bps, Translation length: 429 residues

Version

ENSBTAT00000043279.4

Type

Protein coding

Annotation Method

Annotation produced by the Ensembl genebuild.

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Transcript: ENSBTAT00000043279.4 SGCA-202

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Transcript: ENSBTAT00000043279.4 SGCA-202

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