Transcript: ENSBTAT00000038244.4 SHMT2-202

Description

serine hydroxymethyltransferase 2 [Source:VGNC Symbol;Acc:VGNC:34604]

Location

Primary_assembly 5: 56,208,141-56,215,539 reverse strand.

About this transcript

This transcript has 13 exons, is annotated with 14 domains and features, is associated with 2274 variant alleles and maps to 23 oligo probes.

Gene

This transcript is a product of gene ENSBTAG00000031500.3 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSBTAT00000106569.1	SHMT2-201	2384	558aa	ENSBTAP00000099164.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0AAA9TQ60	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical,
ENSBTAT00000134973.1	SHMT2-203	2328	528aa	ENSBTAP00000086264.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0AAA9SJ37	APPRIS P2: Where the APPRIS core modules are unable to choose a clear principal variant (approximately 25% of human protein coding genes), the database chooses two or more of the CDS variants as "candidates" to be the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P2,
ENSBTAT00000038244.4	SHMT2-202	2235	497aa	ENSBTAP00000038059.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0AAF6ZD84	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,

Summary

Statistics

Exons: 13, Coding exons: 12, Transcript length: 2,235 bps, Translation length: 497 residues

Version

ENSBTAT00000038244.4

Type

Protein coding

Annotation Method

Annotation produced by the Ensembl genebuild.

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Transcript: ENSBTAT00000038244.4 SHMT2-202

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Transcript: ENSBTAT00000038244.4 SHMT2-202

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