Transcript: ENSBTAT00000030214.6 PCDH19-202

Description

protocadherin 19 [Source:VGNC Symbol;Acc:VGNC:32620]

Location

About this transcript

This transcript has 5 exons, is annotated with 54 domains and features and is associated with 2376 variant alleles.

Gene

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSBTAT00000079574.2	PCDH19-201	4638	1145aa	ENSBTAP00000059291.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A3Q1LJ38	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS ALT1: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that is conserved in at least three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT1,
ENSBTAT00000030214.6	PCDH19-202	4497	1098aa	ENSBTAP00000030199.4	Gene/transcipt that contains an open reading frame (ORF).Protein coding	E1BDF9	APPRIS P4: Where the APPRIS core modules are unable to choose a clear principal CDS and there is more than one variant with a distinct (but consecutive) CCDS identifiers, APPRIS selects the longest CCDS isoform as the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P4,

Summary

Statistics

Exons: 5, Coding exons: 5, Transcript length: 4,497 bps, Translation length: 1,098 residues

Version

ENSBTAT00000030214.6

Type

Protein coding

Annotation Method

Annotation produced by the Ensembl genebuild.