Transcript: ENSBTAT00000026996.7 PTPN5-201

Description

protein tyrosine phosphatase non-receptor type 5 [Source:VGNC Symbol;Acc:VGNC:33540]

Location

About this transcript

This transcript has 15 exons, is annotated with 36 domains and features, is associated with 4229 variant alleles and maps to 9 oligo probes.

Gene

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSBTAT00000069592.3	PTPN5-202	3021	541aa	ENSBTAP00000069021.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A3Q1NCC1	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS P4: Where the APPRIS core modules are unable to choose a clear principal CDS and there is more than one variant with a distinct (but consecutive) CCDS identifiers, APPRIS selects the longest CCDS isoform as the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P4,
ENSBTAT00000026996.7	PTPN5-201	3223	539aa	ENSBTAP00000026996.6	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A6QQD4 F6QBD8	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,

Summary

Statistics

Exons: 15, Coding exons: 13, Transcript length: 3,223 bps, Translation length: 539 residues

Version

ENSBTAT00000026996.7

Type

Protein coding

Annotation Method

Annotation produced by the Ensembl genebuild.