Transcript: ENSBTAT00000025019.7 PMS1-202

Description

PMS1 homolog 1, mismatch repair system component [Source:VGNC Symbol;Acc:VGNC:33077]

Location

Primary_assembly 2: 6,460,096-6,572,000 reverse strand.

About this transcript

This transcript has 13 exons, is annotated with 32 domains and features, is associated with 4163 variant alleles and maps to 12 oligo probes.

Gene

This transcript is a product of gene ENSBTAG00000018795.8 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSBTAT00000076622.2	PMS1-207	3244	951aa	ENSBTAP00000072141.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A3Q1MKP5	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
ENSBTAT00000025019.7	PMS1-202	3088	932aa	ENSBTAP00000025019.5	Gene/transcipt that contains an open reading frame (ORF).Protein coding	F1MW63	APPRIS P2: Where the APPRIS core modules are unable to choose a clear principal variant (approximately 25% of human protein coding genes), the database chooses two or more of the CDS variants as "candidates" to be the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P2,
ENSBTAT00000100015.1	PMS1-206	2982	871aa	ENSBTAP00000077517.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0AAA9S5S8	-
ENSBTAT00000072587.2	PMS1-203	2971	893aa	ENSBTAP00000062662.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A3Q1LR04	-
ENSBTAT00000116812.1	PMS1-201	2960	897aa	ENSBTAP00000080069.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0AAA9S4I3	-
ENSBTAT00000123340.1	PMS1-204	2944	884aa	ENSBTAP00000092191.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0AAA9T6I6	-
ENSBTAT00000110326.1	PMS1-205	2602	770aa	ENSBTAP00000091213.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0AAA9SXL3	-
ENSBTAT00000117126.1	PMS1-209	2104	667aa	ENSBTAP00000075388.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0AAA9RW97	-
ENSBTAT00000112228.1	PMS1-208	847	248aa	ENSBTAP00000085591.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0AAA9SNW8	-

Summary

Statistics

Exons: 13, Coding exons: 12, Transcript length: 3,088 bps, Translation length: 932 residues

Version

ENSBTAT00000025019.7

Type

Protein coding

Annotation Method

Annotation produced by the Ensembl genebuild.

Upcoming Ensembl Platform Transition

Transcript: ENSBTAT00000025019.7 PMS1-202

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Transcript: ENSBTAT00000025019.7 PMS1-202

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