Transcript: ENSBTAT00000019421.3 CLDN18-201

Description

claudin 18 [Source:VGNC Symbol;Acc:VGNC:27408]

Location

About this transcript

This transcript has 5 exons, is annotated with 35 domains and features, is associated with 1029 variant alleles and maps to 12 oligo probes.

Gene

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSBTAT00000019421.3	CLDN18-201	1710	261aa	ENSBTAP00000019421.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	Q0VCN0	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS ALT1: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that is conserved in at least three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT1,
ENSBTAT00000097089.1	CLDN18-202	1578	261aa	ENSBTAP00000080521.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0AAA9SDS4	APPRIS P4: Where the APPRIS core modules are unable to choose a clear principal CDS and there is more than one variant with a distinct (but consecutive) CCDS identifiers, APPRIS selects the longest CCDS isoform as the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P4,

Summary

Statistics

Exons: 5, Coding exons: 5, Transcript length: 1,710 bps, Translation length: 261 residues

Uniprot

This transcript corresponds to the following Uniprot identifiers: Q0VCN0

Version

ENSBTAT00000019421.3

Type

Protein coding

Annotation Method

Annotation produced by the Ensembl genebuild.