Transcript: ENSBTAT00000013589.6 NPAT-203

Description

nuclear protein, coactivator of histone transcription [Source:VGNC Symbol;Acc:VGNC:50617]

Location

Primary_assembly 15: 17,789,813-17,842,981 reverse strand.

About this transcript

This transcript has 18 exons, is annotated with 23 domains and features, is associated with 2471 variant alleles and maps to 12 oligo probes.

Gene

This transcript is a product of gene ENSBTAG00000010286.6 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSBTAT00000013589.6	NPAT-203	5569	1433aa	ENSBTAP00000013589.5	Gene/transcipt that contains an open reading frame (ORF).Protein coding	F1MHZ3	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS P2: Where the APPRIS core modules are unable to choose a clear principal variant (approximately 25% of human protein coding genes), the database chooses two or more of the CDS variants as "candidates" to be the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P2,
ENSBTAT00000135043.1	NPAT-202	5407	1395aa	ENSBTAP00000082674.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0AAA9SFM4	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
ENSBTAT00000130150.1	NPAT-201	5340	1352aa	ENSBTAP00000090539.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0AAA9SYU1	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,

Summary

Statistics

Exons: 18, Coding exons: 18, Transcript length: 5,569 bps, Translation length: 1,433 residues

Version

ENSBTAT00000013589.6

Type

Protein coding

Annotation Method

Annotation produced by the Ensembl genebuild.

Upcoming Ensembl Platform Transition

Transcript: ENSBTAT00000013589.6 NPAT-203

Summary

About Us

Get help

Our sister sites

Follow us

Upcoming Ensembl Platform Transition

Favourite species

All species

Recent locations

Transcript: ENSBTAT00000013589.6 NPAT-203

Summary

About Us

Get help

Our sister sites

Follow us