Transcript: ENSBTAT00000008203.7 CASC3-202

Description

CASC3 exon junction complex subunit [Source:VGNC Symbol;Acc:VGNC:54702]

Location

About this transcript

This transcript has 14 exons, is annotated with 26 domains and features, is associated with 2252 variant alleles and maps to 22 oligo probes.

Gene

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSBTAT00000079130.3	CASC3-201	3902	703aa	ENSBTAP00000072025.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A3Q1NIX3 A5D7H5	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS P2: Where the APPRIS core modules are unable to choose a clear principal variant (approximately 25% of human protein coding genes), the database chooses two or more of the CDS variants as "candidates" to be the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P2,
ENSBTAT00000008203.7	CASC3-202	3828	678aa	ENSBTAP00000008203.5	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0AAF6YPJ0	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,

Summary

Statistics

Exons: 14, Coding exons: 13, Transcript length: 3,828 bps, Translation length: 678 residues

Version

ENSBTAT00000008203.7

Type

Protein coding

Annotation Method

Annotation produced by the Ensembl genebuild.