Summary
Sequence
Protein Information
- Protein summary
- Domains & features
- Variants
- PDB 3D protein model
- AlphaFold predicted model
Genetic Variation
- Variant table
- Variant image
- Population comparison
- Comparison image
External References
- General identifiers
- Oligo probes
Supporting evidence
ID History
- Transcript history
- Protein history

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Transcript: ENSBTAT00000011678.8 CAPN1-202

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Description

calpain 1 [Source:VGNC Symbol;Acc:VGNC:26740]

Location

Primary_assembly 29: 43,400,830-43,427,417 forward strand.

About this transcript

This transcript has 21 exons, is annotated with 30 domains and features, is associated with 3554 variant alleles and maps to 12 oligo probes.

Gene

This transcript is a product of gene ENSBTAG00000010230.8 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSBTAT00000130093.2	CAPN1-201	3368	816aa	ENSBTAP00000091522.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0AAA9T4D7	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS P2: Where the APPRIS core modules are unable to choose a clear principal variant (approximately 25% of human protein coding genes), the database chooses two or more of the CDS variants as "candidates" to be the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P2,
ENSBTAT00000097925.2	CAPN1-203	3107	729aa	ENSBTAP00000098417.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0AAA9TPX0	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
ENSBTAT00000011678.8	CAPN1-202	3095	724aa	ENSBTAP00000011678.7	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A452DJ01	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,

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Protein summary

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Protein domains for ENSBTAP00000011678.7

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