Summary
Sequence
Protein Information
- Protein summary
- Domains & features
- Variants
- PDB 3D protein model
- AlphaFold predicted model
Genetic Variation
- Variant table
- Variant image
- Population comparison
- Comparison image
External References
- General identifiers
- Oligo probes
Supporting evidence
ID History
- Transcript history
- Protein history

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Transcript: ENSBTAT00000004329.6 VSX1-201

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Description

visual system homeobox 1 [Source:VGNC Symbol;Acc:VGNC:36845]

Location

Primary_assembly 13: 42,691,095-42,699,689 reverse strand.

About this transcript

This transcript has 5 exons, is annotated with 26 domains and features, is associated with 951 variant alleles and maps to 12 oligo probes.

Gene

This transcript is a product of gene ENSBTAG00000003335.8 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSBTAT00000004329.6	VSX1-201	1939	365aa	ENSBTAP00000004329.6	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A452DIK2	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1,
ENSBTAT00000114840.1	VSX1-202	1002	237aa	ENSBTAP00000075341.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0AAA9RZV0	-

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Protein summary

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Protein domains for ENSBTAP00000004329.6

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