Summary
Sequence
Protein Information
- Protein summary
- Domains & features
- Variants
- PDB 3D protein model
- AlphaFold predicted model
Genetic Variation
- Variant table
- Variant image
- Population comparison
- Comparison image
External References
- General identifiers
- Oligo probes
Supporting evidence
ID History
- Transcript history
- Protein history

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Transcript: ENSBTAT00000004243.6 HOXC10-202

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Description

homeobox C10 [Source:VGNC Symbol;Acc:VGNC:56206]

Location

Primary_assembly 5: 26,042,339-26,047,529 reverse strand.

About this transcript

This transcript has 2 exons, is annotated with 20 domains and features, is associated with 1339 variant alleles and maps to 11 oligo probes.

Gene

This transcript is a product of gene ENSBTAG00000003278.6 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSBTAT00000070486.2	HOXC10-201	2263	373aa	ENSBTAP00000063935.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A3Q1N3B9	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
ENSBTAT00000004243.6	HOXC10-202	2081	342aa	ENSBTAP00000004243.5	Gene/transcipt that contains an open reading frame (ORF).Protein coding	F1MY80	APPRIS P2: Where the APPRIS core modules are unable to choose a clear principal variant (approximately 25% of human protein coding genes), the database chooses two or more of the CDS variants as "candidates" to be the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P2,

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Protein summary

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Protein domains for ENSBTAP00000004243.5

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