Summary
- Splice variants
- Transcript comparison
- Gene alleles
Sequence
- Secondary Structure
Comparative Genomics
- Genomic alignments
- Gene tree
- Gene gain/loss tree
- Orthologues
- Paralogues
- Breeds
Ontologies
- GO: Cellular component
- GO: Molecular function
- GO: Biological process
Phenotypes
Genetic Variation
Gene expression
Pathway
Molecular interactions
External references
Supporting evidence
ID History
- Gene history

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Gene: SOX6 ENSBTAG00000044185

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Description

SRY-box transcription factor 6 [Source:VGNC Symbol;Acc:VGNC:35150]

Location

Primary_assembly 15: 35,835,893-36,544,609 forward strand.

ARS-UCD2.0:CM008182.2

About this gene

This gene has 6 transcripts (splice variants), 213 orthologues and 19 paralogues.

Transcripts

Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSBTAT00000143693.1	SOX6-201	5292	843aa	ENSBTAP00000104811.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	-	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical,
ENSBTAT00000066730.3	SOX6-205	5145	835aa	ENSBTAP00000069818.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A3Q1NE28	-
ENSBTAT00000143657.1	SOX6-202	5121	786aa	ENSBTAP00000107203.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	-	APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1,
ENSBTAT00000069703.3	SOX6-206	5027	802aa	ENSBTAP00000066611.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A3Q1M911	-
ENSBTAT00000079656.3	SOX6-204	5002	804aa	ENSBTAP00000063233.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A3Q1M0P9	-
ENSBTAT00000061473.5	SOX6-203	2828	841aa	ENSBTAP00000053691.4	Gene/transcipt that contains an open reading frame (ORF).Protein coding	E1BE01	-

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Summary

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