Summary
- Splice variants
- Transcript comparison
- Gene alleles
Sequence
- Secondary Structure
Comparative Genomics
Ontologies
- GO: Biological process
- GO: Molecular function
- GO: Cellular component
Phenotypes
Genetic Variation
Gene expression
Pathway
Molecular interactions
External references
Supporting evidence
ID History
- Gene history

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Gene: ZNF554 ENSBTAG00000031352

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Description

zinc finger protein 554 [Source:VGNC Symbol;Acc:VGNC:37301]

Location

Primary_assembly 7: 20,869,176-20,881,200 reverse strand.

ARS-UCD2.0:CM008174.2

About this gene

This gene has 3 transcripts (splice variants), 140 orthologues and 31 paralogues.

Transcripts

Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSBTAT00000092088.1	ZNF554-203	2264	636aa	ENSBTAP00000097114.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0AAA9TJL0	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS P2: Where the APPRIS core modules are unable to choose a clear principal variant (approximately 25% of human protein coding genes), the database chooses two or more of the CDS variants as "candidates" to be the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P2,
ENSBTAT00000069078.2	ZNF554-201	2103	540aa	ENSBTAP00000065211.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A3Q1LWW7	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
ENSBTAT00000000456.7	ZNF554-202	2047	538aa	ENSBTAP00000000456.6	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0AAF6DMF5	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,

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Summary

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