Summary
- Splice variants
- Transcript comparison
- Gene alleles
Sequence
- Secondary Structure
Comparative Genomics
Ontologies
Phenotypes
Genetic Variation
Gene expression
Pathway
Molecular interactions
Regulation
External references
Supporting evidence
ID History
- Gene history

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Gene: ITSN1 ENSBTAG00000021997

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Description

intersectin 1 [Source:VGNC Symbol;Acc:VGNC:30352]

Location

Primary_assembly 1: 1,665,074-1,908,831 reverse strand.

ARS-UCD1.3:CM008168.2

About this gene

This gene has 8 transcripts (splice variants), 227 orthologues and 13 paralogues.

Transcripts

Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSBTAT00000081085.2	ITSN1-201	5756	1721aa	ENSBTAP00000057382.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A3Q1LQU1	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS ALT1: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that is conserved in at least three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT1,
ENSBTAT00000029333.7	ITSN1-202	5741	1716aa	ENSBTAP00000029333.6	Gene/transcipt that contains an open reading frame (ORF).Protein coding	E1BKY4	APPRIS P4: Where the APPRIS core modules are unable to choose a clear principal CDS and there is more than one variant with a distinct (but consecutive) CCDS identifiers, APPRIS selects the longest CCDS isoform as the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P4,
ENSBTAT00000103977.1	ITSN1-205	4989	1220aa	ENSBTAP00000103620.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	-	-
ENSBTAT00000065213.3	ITSN1-206	4785	1149aa	ENSBTAP00000055481.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding	G3N0W1	-
ENSBTAT00000119777.1	ITSN1-203	4277	1306aa	ENSBTAP00000091729.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	-	-
ENSBTAT00000113524.1	ITSN1-204	4211	1051aa	ENSBTAP00000080421.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	-	-
ENSBTAT00000100507.1	ITSN1-208	3407	1015aa	ENSBTAP00000086978.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	-	-
ENSBTAT00000116431.1	ITSN1-207	2987	878aa	ENSBTAP00000084574.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	-	-

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Summary

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