Summary
- Splice variants
- Transcript comparison
- Gene alleles
Sequence
- Secondary Structure
Comparative Genomics
Ontologies
- GO: Anatomical entity
Phenotypes
Genetic Variation
Gene expression
Pathway
Molecular interactions
External references
Supporting evidence
ID History
- Gene history

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Gene: RAPGEF4 ENSBTAG00000020984

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Description

Rap guanine nucleotide exchange factor 4 [Source:VGNC Symbol;Acc:VGNC:33725]

Location

Primary_assembly 2: 23,607,682-23,937,906 reverse strand.

ARS-UCD2.0:CM008169.2

About this gene

This gene has 6 transcripts (splice variants), 275 orthologues and 22 paralogues.

Transcripts

Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSBTAT00000101996.1	RAPGEF4-204	4466	1035aa	ENSBTAP00000086569.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0AAA9SRG7	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical,
ENSBTAT00000114465.1	RAPGEF4-205	4394	1011aa	ENSBTAP00000090391.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0AAA9T1V7	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
ENSBTAT00000061074.4	RAPGEF4-203	4235	993aa	ENSBTAP00000053320.4	Gene/transcipt that contains an open reading frame (ORF).Protein coding	E1BPX7	APPRIS P2: Where the APPRIS core modules are unable to choose a clear principal variant (approximately 25% of human protein coding genes), the database chooses two or more of the CDS variants as "candidates" to be the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P2,
ENSBTAT00000103949.1	RAPGEF4-202	4231	937aa	ENSBTAP00000076169.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0AAA9RY52	-
ENSBTAT00000120342.1	RAPGEF4-206	4190	943aa	ENSBTAP00000087489.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0AAA9SU06	-
ENSBTAT00000092133.1	RAPGEF4-201	4056	867aa	ENSBTAP00000085364.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0AAA9SGQ1	-

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Summary

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