Summary
- Splice variants
- Transcript comparison
- Gene alleles
Sequence
- Secondary Structure
Comparative Genomics
Ontologies
- GO: Anatomical entity
Phenotypes
Genetic Variation
Gene expression
Pathway
Molecular interactions
External references
Supporting evidence
ID History
- Gene history

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Gene: CHD1 ENSBTAG00000020860

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Description

chromodomain helicase DNA binding protein 1 [Source:VGNC Symbol;Acc:VGNC:27276]

Location

Primary_assembly 7: 98,079,213-98,151,747 reverse strand.

ARS-UCD2.0:CM008174.2

About this gene

This gene has 3 transcripts (splice variants), 209 orthologues and 30 paralogues.

Transcripts

Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSBTAT00000034967.5	CHD1-201	6976	1810aa	ENSBTAP00000034848.5	Gene/transcipt that contains an open reading frame (ORF).Protein coding	F1MGF2	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical,
ENSBTAT00000078946.2	CHD1-202	6679	1711aa	ENSBTAP00000064253.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A3Q1LUM8	APPRIS P2: Where the APPRIS core modules are unable to choose a clear principal variant (approximately 25% of human protein coding genes), the database chooses two or more of the CDS variants as "candidates" to be the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P2,
ENSBTAT00000067483.2	CHD1-203	6550	1668aa	ENSBTAP00000067721.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A3Q1MAR5	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,

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Summary

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