Summary
- Splice variants
- Transcript comparison
- Gene alleles
Sequence
- Secondary Structure
Comparative Genomics
Ontologies
- GO: Anatomical entity
Phenotypes
Genetic Variation
Gene expression
Pathway
Molecular interactions
Regulation
External references
Supporting evidence
ID History
- Gene history

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Gene: PRDM2 ENSBTAG00000020552

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Description

PR/SET domain 2 [Source:VGNC Symbol;Acc:VGNC:33295]

Location

Primary_assembly 16: 53,790,017-53,921,927 reverse strand.

ARS-UCD2.0:CM008183.2

About this gene

This gene has 9 transcripts (splice variants), 215 orthologues and 34 paralogues.

Transcripts

Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSBTAT00000086222.2	PRDM2-205	5264	1666aa	ENSBTAP00000059386.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A3Q1LVN6	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS P5: Where the APPRIS core modules are unable to choose a clear principal variant and none of the candidate variants are annotated by CCDS, APPRIS selects the longest of the candidate isoforms as the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P5,
ENSBTAT00000076597.2	PRDM2-209	6180	1659aa	ENSBTAP00000063558.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A3Q1M1G6	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
ENSBTAT00000076043.2	PRDM2-206	6175	1665aa	ENSBTAP00000063385.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A3Q1M117	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
ENSBTAT00000099902.1	PRDM2-208	6004	1608aa	ENSBTAP00000085353.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0AAA9SJ40	-
ENSBTAT00000093907.1	PRDM2-201	5968	1660aa	ENSBTAP00000101049.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0AAA9TUN4	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
ENSBTAT00000067363.2	PRDM2-203	5507	1627aa	ENSBTAP00000065254.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A3Q1M9T9	-
ENSBTAT00000027387.7	PRDM2-204	5027	1588aa	ENSBTAP00000027387.7	Gene/transcipt that contains an open reading frame (ORF).Protein coding	F1N790	-
ENSBTAT00000079197.2	PRDM2-207	4663	1461aa	ENSBTAP00000073708.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A3Q1MTN2	-
ENSBTAT00000111051.1	PRDM2-202	1409	263aa	ENSBTAP00000092002.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0AAA9SZU6	-

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Summary

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