Summary
- Splice variants
- Transcript comparison
- Gene alleles
Sequence
- Secondary Structure
Comparative Genomics
Ontologies
Phenotypes
Genetic Variation
Gene expression
Pathway
Molecular interactions
Regulation
External references
Supporting evidence
ID History
- Gene history

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Gene: PTCD1 ENSBTAG00000020440

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Description

pentatricopeptide repeat domain 1 [Source:VGNC Symbol;Acc:VGNC:110060]

Location

Primary_assembly 25: 36,971,608-36,984,564 forward strand.

ARS-UCD1.3:CM008192.2

About this gene

This gene has 6 transcripts (splice variants), 189 orthologues and 1 paralogue.

Transcripts

Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSBTAT00000104473.1	PTCD1-201	3262	821aa	ENSBTAP00000102536.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	-	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical,
ENSBTAT00000066472.2	PTCD1-205	3627	808aa	ENSBTAP00000073709.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A3Q1MQ62	-
ENSBTAT00000134317.1	PTCD1-204	3453	750aa	ENSBTAP00000098849.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	-	-
ENSBTAT00000131720.1	PTCD1-206	3134	703aa	ENSBTAP00000086342.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	-	APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1,
ENSBTAT00000135772.1	PTCD1-202	3059	656aa	ENSBTAP00000090042.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	-	-
ENSBTAT00000027241.7	PTCD1-203	2827	656aa	ENSBTAP00000027241.7	Gene/transcipt that contains an open reading frame (ORF).Protein coding	E1BNM9	-

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Summary

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