Summary
- Splice variants
- Transcript comparison
- Gene alleles
Sequence
- Secondary Structure
Comparative Genomics
Ontologies
- GO: Anatomical entity
Phenotypes
Genetic Variation
Gene expression
Pathway
Molecular interactions
External references
Supporting evidence
ID History
- Gene history

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Gene: NPAS2 ENSBTAG00000019697

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Description

neuronal PAS domain protein 2 [Source:VGNC Symbol;Acc:VGNC:32190]

Location

Primary_assembly 11: 5,820,206-5,970,822 forward strand.

ARS-UCD2.0:CM008178.2

About this gene

This gene has 6 transcripts (splice variants), 142 orthologues and 5 paralogues.

Transcripts

Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSBTAT00000110024.1	NPAS2-204	3945	891aa	ENSBTAP00000098646.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0AAA9TQF5	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
ENSBTAT00000118059.1	NPAS2-205	3894	770aa	ENSBTAP00000091337.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0AAA9T0W7	-
ENSBTAT00000120311.1	NPAS2-201	3793	823aa	ENSBTAP00000075038.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0AAA9RZ40	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
ENSBTAT00000073725.2	NPAS2-202	3741	823aa	ENSBTAP00000070462.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A3Q1MM57	APPRIS P5: Where the APPRIS core modules are unable to choose a clear principal variant and none of the candidate variants are annotated by CCDS, APPRIS selects the longest of the candidate isoforms as the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P5,
ENSBTAT00000103078.1	NPAS2-206	3650	773aa	ENSBTAP00000097509.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0AAA9TG19	-
ENSBTAT00000129753.1	NPAS2-203	3594	774aa	ENSBTAP00000085299.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0AAA9SGJ4	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,

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Summary

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